[Bug 707826] New: perl-Bio-SamTools missing from EL6

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Summary: perl-Bio-SamTools missing from EL6

https://bugzilla.redhat.com/show_bug.cgi?id=707826

Summary: perl-Bio-SamTools missing from EL6
           Product: Fedora EPEL
           Version: el6
          Platform: Unspecified
        OS/Version: Unspecified
            Status: NEW
          Severity: unspecified
          Priority: unspecified
         Component: perl-Bio-SamTools
        AssignedTo: [e-mail]
        ReportedBy: [e-mail]
         QAContact: [e-mail]
                CC: [e-mail], [e-mail]
    Classification: Fedora
      Story Points: ---

Description of problem:

Please push perl-Bio-SamTools to EL6 branch. It's also a little behind
upstream, which has released 1.28.

[Bug 707826] perl-Bio-SamTools missing from EL6

[Red Hat Bugzilla]

Please do not reply directly to this email. All additional
comments should be made in the comments box of this bug.

https://bugzilla.redhat.com/show_bug.cgi?id=707826

Petr Pisar  changed:

What    |Removed                     |Added
----------------------------------------------------------------------------
                 CC|                            |[e-mail]

--- Comment #1 from Petr Pisar  2011-05-26 08:55:55 EDT ---
Adam,

if you register this package in Fedora Upstream Monitoring Service
https://fedoraproject.org/wiki/Upstream_release_monitoring#N_-_P you will get
automatic notifications when new version will have been released.

[Bug 707826] perl-Bio-SamTools missing from EL6

[Red Hat Bugzilla]

Please do not reply directly to this email. All additional
comments should be made in the comments box of this bug.

https://bugzilla.redhat.com/show_bug.cgi?id=707826

--- Comment #2 from Adam Huffman  2011-05-27 06:48:37 EDT ---
Petr,

Yes, I'd been meaning to look into that.

Jack,

I'm waiting for my recent samtools updates to go into EPEL proper.  Once that's
done, I'll make an EL6 branch of perl-Bio-SamTools.

[Bug 707826] perl-Bio-SamTools missing from EL6

[Red Hat Bugzilla]

Please do not reply directly to this email. All additional
comments should be made in the comments box of this bug.

https://bugzilla.redhat.com/show_bug.cgi?id=707826

--- Comment #3 from Jack Tanner  2011-05-30 15:09:06 EDT ---
Thanks, Adam, looking forward to it. You're probably already aware that EL6
doesn't have perl-bioperl. Getting that built as a pre-req for
perl-Bio-SamTools was a bit of work.

[Bug 707826] perl-Bio-SamTools missing from EL6

[Red Hat Bugzilla]

Please do not reply directly to this email. All additional
comments should be made in the comments box of this bug.

https://bugzilla.redhat.com/show_bug.cgi?id=707826

--- Comment #4 from Adam Huffman  2011-06-04 07:48:01 EDT ---
I've already done perl-bioperl for EL5, which was indeed quite a slog... 
Stymied a little at the moment as I don't have an EL6 installation, but I've
applied for an EPEL-based entitlement.

Anyway, samtools is now in EL6.

[Bug 707826] perl-Bio-SamTools missing from EL6

[Red Hat Bugzilla]

https://bugzilla.redhat.com/show_bug.cgi?id=707826

Adam Huffman  changed:

What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |CLOSED
         Resolution|---                         |WONTFIX
        Last Closed|                            |2013-10-04 12:30:20

--- Comment #5 from Adam Huffman  ---
Unfortunately, this package depended on perl-bioperl, which was orphaned. So I
had to orphan this one too, because I can't commit to maintaining perl-bioperl.